neginmb

Directory rather than a single file as an input?

1

How to provide cd-hit with a directory rather than a file as input? My purpose is to compare all the sequences in all fasta files in this directory against each...

SNP vs K-mer

1

Hi, I already applied Pyseer on the SNP level. I wondered if applying Pyseer on k-mers for my dataset will provide me with new information? If so which kind of...

Interpretation of the results of Wald test for association between lineages and phenotype

3

Is the low p-value for the wald test of association between lineage and phenotype only an indicator of a positive association or also a negative association between them?