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Published 20 hours ago • verified publisher icon mgalardini

SNP vs K-mer

Open neginmb opened this issue 3 years ago • 1 comments

Hi, I already applied Pyseer on the SNP level. I wondered if applying Pyseer on k-mers for my dataset will provide me with new information? If so which kind of information?

neginmb avatar Oct 19 '21 10:10 neginmb

Please see reviews:

  • https://www.nature.com/articles/nrmicro.2016.82
  • https://www.nature.com/articles/nmicrobiol201659
  • https://figshare.com/articles/thesis/The_background_of_bacterial_GWAS/5550037

papers:

  • https://www.pnas.org/content/110/29/11923
  • https://www.nature.com/articles/ncomms12797
  • https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007758

johnlees avatar Oct 19 '21 10:10 johnlees