Nicolas Dierckxsens

It seems all except TK151533 have no mitochondrial reads in the dataset. TK151533 didn't really fail though, the complete genome should be in the output

Hi, Don't really understand the problem, which version do you use? And can you send me the log file?

Are you sure it is an assembly mistake? These genetic structures can occur in mitochondrial genomes

I never saw this problem before, so could you send me the extended log to check if it is a mistake? Maybe you will have to run again (with that...

Sorry I didn't had time to reply. I will look at it better tomorrow, I think there is indeed a mistake during the repetitive region, but it just repeats everything...

I can get your contig out of the extended log so maybe you want to remove it I found the problem but it is not really an error of NOVOPlasty....

How did you found out?

Ok thanks for the info!

Hi, I would add a insert size, although doesn't have to be accurate, just put 300. I would also recommend to download the latest version 3.7.2 and to use a...

Hi, It never subsamples automatically, it means there is a problem with the read ids. I guess you merged datasets with different read id structures You can send the first...