Nathan S. Watson-Haigh

I have just received all the parts for this project from banggood. This is my first ever ESP32 project and I will likely have some recommendations for the documentation. I'll...

> likewise, this is my first and i am struggling to work it out. What were you struggling with @DrJon85? Maybe I could help out.

There is another issue open regarding CSI index support in htsjdk: #447

Perhaps the code developed for use by JBrowse could help? BAM Index * https://github.com/GMOD/bam-js/blob/master/src/bai.ts * https://github.com/GMOD/bam-js/blob/master/src/csi.ts Tabix Index * https://github.com/GMOD/tabix-js/blob/master/src/tbi.ts * https://github.com/GMOD/tabix-js/blob/master/src/csi.ts

Just to add a resource link which may be useful: - https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#the-gap-attribute

Perhaps the new search dialog in the upcoming release would suit some of your needs @SamCT? Have a look at the screenshot here: https://github.com/GMOD/jbrowse/pull/1101

@cmdcolin this has given me some ideas for other things...thanks for pointing this out!

Issue regarding better out-of-the-box support for Dbxref and Ontology_term linking: #1089

Could this be due to the "enhancer" being specified out of sort order (at the end) and even if it was in sorted order it would occur before the parent...

@cmdcolin The GFF3 spec (https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#parent-part_of-relationships) states: > The GFF3 format does not enforce a rule in which features must be wholly contained within the location of their parents, since some...