Nate Coraor
Nate Coraor
Currently, DMs are installed via the Test Installer and then data is built into Corral. When the DM is installed, paths are: * Tool Data (data table conf and loc...
We shouldn't be doing this through the UI on Test or Main. Updates of most tools should happen automatically when there are new versions in the Tool Shed. This would...
1. We should probably use CI to attempt to create a test environment as similar to Main as possible so that we can test changes that often break things, e.g....
We are now doing a fairly good job of keeping track of changes to Main because almost all of it is recorded in a transactional form: - Code updates and...
There is a lot of duplication, and a lot of ugly, "just get it working" junk in there. And if you break something, there are about 50 different paths to...
## How to test the changes? (Select all options that apply) - [x] This is a refactoring of components with existing test coverage. - [x] Instructions for manual testing are...
**Describe the bug** The dataset link generated for the UCSC display application is: ``` https://test.galaxyproject.org//root/display_as?id=2341760&display_app=ucsc&authz_method=display_at ``` ultimately becoming the following link to UCSC: ``` https://test.galaxyproject.org/datasets/2341760/display_at/ucsc_main?redirect_url=http%3A%2F%2Fgenome.ucsc.edu%2Fcgi-bin%2FhgTracks%3Fdb%3Dhg17%26position%3Dchr1%3A147962192-148185276%26hgt.customText%3D%25s&display_url=https%3A%2F%2Ftest.galaxyproject.org%2F%2Froot%2Fdisplay_as%3Fid%3D2341760%26display_app%3Ducsc%26authz_method%3Ddisplay_at ``` Loading this results in...
Despite the overlap in `mulled-v1-` naming, the `v1_image_name` in mulled.util is not actually used for conda v1 mulled hashes. Perhaps it should, since as far as I know, we never...
Note: You need to set `$NB_UID` in your job conf environment (destination) for this tool. ```yaml docker_run_extra_arguments: "-e NB_UID=$(id -u)" ``` I added `` for running via Pulsar but this...