Nate Coraor
Nate Coraor
In the application I develop on, [we delay importing drmaa](https://github.com/galaxyproject/galaxy/blob/1e3bd2d4e831331b8e3b314bac287288fa4533fc/lib/galaxy/jobs/runners/drmaa.py#L55) so that `$DRMAA_LIBRARY_PATH` can be set in the application config. We also [map the state constants to corresponding strings](https://github.com/galaxyproject/galaxy/blob/1e3bd2d4e831331b8e3b314bac287288fa4533fc/lib/galaxy/jobs/runners/drmaa.py#L75). We're...
**Describe the bug** After the starlette upgrade in 0c0da9c821e81ee3e077b70c52c7bf180036333f, trailing slashes in `galaxy_url_prefix` are no longer stripped/collapsed/ignored as they were before. As a result, if set to `/prefix/`, the URL...
**Describe the bug** If *no* requirements for a tool are resolved through conda, that is considered a resolution miss and the resolution process continues with the next resolver. However, if...
You can now inline your job metrics config (galaxyproject/galaxy#17178) and object store config (galaxyproject/galaxy#17222), we should probably adjust trainings accordingly. The fewer extra config files the better IMO.
Using a 4-space indent to add paragraphs in list items does some weird stuff: 1. Paragraph spacing is almost the same as line spacing inside a paragraph, which makes consecutive...
This adds the backend MSA server from the MMSeqs2-app package ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this...
Now that we're using "scratch storage" on usegalaxy.org, people are going to start regularly having history items deleted and purged that they did not delete themselves. This is likely to...
This is a semi-common occurrence to the point where I have a script I run against Pulsar endpoints that does the following: 1. Check for non-terminal jobs in the DB...
It seems likely that we need to integrate SchedMD/slurm@f1b121441cac71486f827af8994d95144d6c6b5f to [somewhere in here](https://github.com/natefoo/slurm-drmaa/blob/be50785f1188bcbaa493f86b2ee08bfa40dfb993/slurm_drmaa/util.c#L601). Things also seem to get strange when using `--mem-per-cpu`, even when `min_cpus` is set properly, but I...
Slurm 20.02+ supports a [Configless mode](https://slurm.schedmd.com/configless_slurm.html) where a physical copy of slurm.conf is not required, clients and slurmds can locate the slurmctld using DNS SRV records. Direct support in slurm-drmaa...