Nate Coraor
Nate Coraor
The config template, `generic.conf.j2` expects to be run in a loop over a list of dicts, but the task that templates it does not do so.
Hoping to use this for insight on TPV rules, although tools I've looked at so far tend not to have super meaningful correlations :upside_down_face:
`galaxy-tool-test` from the galaxy.tool_util package is largely an improvement to `shed-tools test`, although it tests individual tools whereas `shed-tools test` tests all the tools in the repo. But it'd be...
We are creating a growing collection of commands with non-unified names, this makes them difficult to discover without looking at the documentation. A nicer interface IMO would be to make...
Because the client build process modifies the repository, when we update we perform a forced update with Ansible's git module that restores the repo to its pristine unmodified version. This...
@nekrut has tasked me with getting tools and data on usegalaxy.org unified with those on usegalaxy.eu and updated regularly as is done on usegalaxy.eu. In meeting w/ @erasche and @bgruening...
From @bwlang on Gitter: > @natefoo : is it reasonable to increase the allowable RAM for seqtk sample to say 10G on usegalaxy.org? With fixed numbers of reads, it needs...
[Currently](https://github.com/galaxyproject/usegalaxy-playbook/blob/9abff60ead0e2df77910553001a3fd99a3a5bf72/env/main/templates/galaxy/config/job_conf.xml.j2#L361) we only set `$LC_ALL` on Pulsar destinations, whereas prior to macroification in 996b99d22617962e48ff00ad07461d15d18ffd41 we set it on all destinations. Not setting it for all is probably a mistake from...
The Galaxy config in the installer Docker image has: ```ini integrated_tool_panel_config = /cvmfs/{test,main}.galaxyproject.org/config/integrated_tool_panel.xml ``` However, Galaxy itself does not use this file because it is read only (it uses `/galaxy-repl/{test,main}/config/integrated_tool_panel.xml`)....
Test/Main use a `tool_conf.xml` deployed by Ansible to a local filesystem because I don't want to add CVMFS transaction handling to the `config` playbook. However, the installer(s) do not have...