medaka
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nanoporetech
Sequence correction provided by ONT Research
**Is your feature request related to a problem? Please describe.** When medaka cannot locate a GPU it will keep running on CPUs. **Describe the solution you'd like** It would be...
We are switching to using the Flonglefor smaller runs and I have noticed that there are more differences (indels mostly) between the consensus sequence medaka produces and the reference for...
Hi Keeping track of all the ONT version numbers can be a bit tricky. Maybe it would be relevant to align the names from the guppy basecaller with medaka. Now...
This might be a general issue for medaka but I have only used medaka_variant so far. **Is your feature request related to a problem? Please describe.** currently medaka only looks...
After creating a bam file with an assembly and an ONT Escherichia Dataset i want to create a consensus file with following command, which seem to always get killed no...
# Patching CVE-2007-4559 Hi, we are security researchers from the Advanced Research Center at [Trellix](https://www.trellix.com). We have began a campaign to patch a widespread bug named CVE-2007-4559. CVE-2007-4559 is a...
Hi, I am running Medaka 1.7.1 on my Canu assembled fasta files and for some reason one of my samples will not finish the medaka run and always freezes. The...
I sequenced one sample using 2 R9.4.1 flow cells along with 2 R10.4 flow cells. Then I used all of the fastq files for an assembly using flye. Is it...
I just started using me `medaka_haploid_variant` to find SNP between ONT reads and HA. I can see that it doesn't work with gbk file (as for e.g. when working with...
Hi! I'm currently trying to run medaka on a HPC server with an LSF grid, however, the computing nodes don't have internet access so when I try to run the...
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Sequence correction provided by ONT Research