flappie

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Hi developers, Thanks for the tool, there is some difficult in installation. I installed all the dependence flappie needed but still failed to install. Hope anyone could help me about...

BJ-Chen-Eric

Installation got stuck in the middle

3

while i was trying to run flappie after installing the python modules and other dependencies, i got stuck in middle which is attached below as snapshot. Please help me in...

subhasiny

kmer model

1

Hi, It suggests that flappie has separate models (r941_native and r941mC_native) for R9.4 MinION and PromethION flow cell. Can you please let me know if there is a way to...

joshidhaivat

Methylation in SAM

3

I started investigations into how to store such data in SAM. It's non trivial due to BAM's choice of using nibbles to store sequences, thus uppercase bases + ambiguity codes...

jkbonfield

kedartatwawadi

The choice between ACGT and ACGU should not matter, as long as the alphabet used for `prepare_mapped_reads.py` is consistent with the per-read references you provide (i.e. if you use Ts...

callumparr

/usr/bin/ld: cannot find -lblas

1

After I cloned the repository and run make: `-bash-4.1$ git clone https://github.com/nanoporetech/flappie` I have this issue: `[ 84%] Linking C executable flappie /usr/bin/ld: cannot find -lblas collect2: ld returned 1...

MeHelmy

running flappie on ubuntu 16.04(run misc/trace_flipflop.py error)

1

Hi I'm getting this error while checking trace viewer.why can i do? Error message: Traceback (most recent call last): File "misc/trace_flipflop.py", line 187, in 'BaseCalled_template', 'Trace')][()] File "h5py/_objects.pyx", line 54,...

jacka87164

Compilation errors: layers.c collect2: ld returned 1 exit; "undefined reference to `cblas_sgemv'"

12

Hi flappie community, I'm getting compilation errors when compiling on CentOS6.8 servers with errors referring to cblas_*. Here is the compiler output: ``` [rahmed@cel flappie]$ make flappie cd build &&...

Rashadx86

Hello, The convolution model in the model file, looks to be padded with zeroes. I am guessing it is for enabling vectorization by aligning with 128bits boundary. Is this understanding...

ramcn