najoshi

Traceback (most recent call last): File "/software/synapseclient/2.4.0/lssc0-linux/bin/synapse", line 33, in sys.exit(load_entry_point('synapseclient==2.4.0', 'console_scripts', 'synapse')()) File "/software/synapseclient/2.4.0/lssc0-linux/bin/synapse", line 22, in importlib_load_entry_point for entry_point in distribution(dist_name).entry_points File "/software/anaconda3/4.9.2/lssc0-linux/lib/python3.9/importlib/metadata.py", line 524, in distribution return...

Once I added the easy-install.pth file, it worked just fine.

or maybe it was the site.py file that I copied over from an older version

python setup.py install --prefix=\

I get these errors when I run "python setup.py build": /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'entry_points' warnings.warn(msg) /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg)

Hmm, I got it to work using setuptools instead of distutils.core in setup.py.

Hi Kevin, I purposely put summary information on stdout, because stderr should only be used for diagnostic and error messages. You can use the --quiet option to suppress the summary...

It looks like it already is... it's called sickle-trim. - Nik. On Thu, Feb 2, 2017 at 2:52 AM, sacha schutz wrote: > This application should be import in bioconda...

Hi Rory, As far as I can tell, all this merge would do is add gnu autotools build to the repo, and it doesn't seem like it actually fixes that...

Hello, Sickle wasn't written with colorspace reads in mind so I can't really say why it would be behaving strange with those reads. If you create a robust solution, maybe...