Melissa Zwaig

Known SV not detected in final output

2

Hello, I'm using CuteSV on Nanopore data with 30X coverage. My sample has a known duplication that isn't making it into the final output but it is detected in the...

Hello, I'm trying to run SURVIVOR on the output from Duet output (does phased SV calling from ONT data, https://github.com/yekaizhou/duet/) but it doesn't give me an output unless I run...

Compatibility with SURVIVOR

5

Hello, I'm trying to run SURVIVOR on the Duet output (generated using cuteSV) but it doesn't give me an output unless I run the same file against itself. Is Duet...

SNP calling not working

6

Hi, I'm trying to run duet but the SNP calling isn't working. Thanks, Melissa > [INFO] Check environment variables [INFO] --include_all_ctgs not enabled, use chr{1..22,X,Y} and {1..22,X,Y} by default [INFO]...