Mengyuan Shen

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link issue #141

update reference #132

this update includes: - fixing assay name when calculating SingleCellExperiment CPM - an option to generate pseudobulk counts and normalised counts when importing

Can't load BlueprintEncodeData from ExperimentHub

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Hi, I get this error while trying to pull data from ExperimentHub by `legacy = TRUE`. ``` celldex::BlueprintEncodeData(legacy = TRUE) snapshotDate(): 2024-04-29 see ?celldex and browseVignettes('celldex') for documentation loading from...

computeCommunProb subscript out of bounds

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Hi, Thanks for the amazing tool. I followed the vignettes to compute communication probability and encountered the following issue. ```R library(CellChat) sce # A SingleCellExperiment-tibble abstraction: 530 × 34 #...

cellNexus

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Update the following URL to point to the GitHub repository of the package you wish to submit to _Bioconductor_ - Repository: https://github.com/MangiolaLaboratory/cellNexus Confirm the following by editing each check box...