Mengyuan Shen

What do we want to download here after selecting sample_? SCE counts and cpm for selected sample_?

so we don't have SummarizedExperiments in the cloud yet but plan to generate them for selected samples? Would converting SCE to SummarizedExperiments work in this case?

In summary, a `pseudobulk` parameter (default is FALSE) has been added to the import API, allowing users to choose whether to generate pseudobulk data dynamically.

These pseudobulk files were not generated successfully, thus not in the cloud "5c1cc788-2645-45fb-b1d9-2f43d368bba8" "3fe53a40-38ff-4f25-b33b-e4d60f2289ef"

good point. this is associated with the cache directory structure strategy implementation. we might need to think about if we want to adapt the same structure strategy as the future...

The `[email protected]` and `object@idents` look ok to me, but LR is empty ``` R > str([email protected]) Formal class 'dgCMatrix' [package "Matrix"] with 6 slots ..@ i : int [1:11730] 3...

I am using the latest celldex Bioc version `1.14.0`. Both MonacoImmuneData and BlueprintEncodeData caches the same data version 2024-02-26, however MonacoImmuneData did not produce the same error, which was odd....

Hi @YXC33, it seems that dataset_id `9fcb0b73-c734-40a5-be9c-ace7eea401c9` does not exist in our metadata, thus it won't be able to generate `Seurat`. This could happen if the dataset was published recently...