Michael Milton
Michael Milton
The spec says: https://github.com/ResearchObject/ro-crate/blob/cee19f152f2503339c475042f049b23ecd6508c0/docs/_specification/1.1/root-data-entity.md#L46-L50 I find this unusual because: - `File` aka [`MediaObject`](https://schema.org/MediaObject) is already a subclass of `CreativeWork` in Schema.org - It contradicts the directions on data entities: https://github.com/ResearchObject/ro-crate/blob/cee19f152f2503339c475042f049b23ecd6508c0/docs/_specification/1.1/data-entities.md#L48...
I enjoy the flexibility of JSON-LD, but I suspect that a lot of the tooling makes assumptions about structure that we haven't actually documented in the spec. Here are some...
An MRE can be found here: https://github.com/multimeric/AriadneCodegenBug. In summary, a schema such as: ```graphql type Query { boards( ids: [ID!] ): [String] } ``` Incorrectly produces: ```python class Query: @classmethod...
One tricky aspect of the codegen is that the generated code requires certain packages, namely `httpx`, `pydantic` etc. The publisher of the generated package has to remember to include these...
Just a thought. If the user has a `pyproject.toml` that contains the `project.scripts` table, you could pull most of the information from there instead of asking users to pass it...
Adds an `XsdImportEngine`, with tests. XSD doesn't map cleanly to LinkML, because: * XML has both attributes and child elements. I treat both as slots, but tag each with a...
Closes #448.
Currently `omero.models` is a magic dynamic module whose contents are only created at runtime, as far as I know. This is annoying for two reasons. The first is that my...
The machine readable files should compile all the types together. `LabProcess` is in this specifications repo but is missing from either: * https://bioschemas.org/types/bioschemas_types.ttl, or * https://bioschemas.org/types/bioschemas_draft_types.ttl
I'm hoping to "cut down" a BigWig by only selecting a number of chromosomes. It would be nice if there were a `bigtools bigSelect --chroms chr1,chr2` that did so, and/or...