Matthieu Muffato

> If the old image is uninstalled, then views should always be updated right? So no dedicated flag for this option is needed. The new image will be added to...

> A parameter that doesn't specify a default value is a *required* param. Can I specify `null` as the default value to indicate an optional param ? Something like ```...

Hello ! That's an impressive PR, congrats ! I'm testing the feature on a few pipelines and noticed that there are some leftover files from running nextflow ```console $ env...

Question: is it solved by the CPU increase you pushed ? Can we close this ticket ? Most recent failure: 24th Apr https://github.com/sanger-tol/genomenote/actions/runs/14649938392/job/41113044219 . This branch was still using 2...

You're right. No more failures recently. Let's close it.

> Ancestral plots NEED odb10 until they are updated (not happening soon) OK, let's disentangle that. In #185, let's add another parameter for the _complete_ name of the Busco lineage...

A workaround is to alter the MerquryFK command line to pass the input Fasta _twice_. ``` Assembly Region Found Total % Covered ilYpsSequ2.1.GCA_934047225.1 all 524725644 659016853 79.62 ilYpsSequ2.1.GCA_934047225.1 all 524725644...

MerquryFK has been fixed, but we've also realised that we need to report the stats on the combined pair of assemblies (principal + alternate, hap1+hap2, etc). #159 will add overall...

I've just realised that `assets/schema_input.json` is still the default one ! We somehow never updated it to match our actual samplesheet :/

On the same vein, I'm slightly uncomfortable by people already adding Wave containers to nf-core modules. I know that the Wave registries can only be pushed from the Wave build...