Results 3 issues of mtruglio

**Description** abritamr tool does not work due to a couple of bugs: 1) in _workflows/bactopia-tools.nf_ , line 42, replace 'ABRICATE' with 'ABRITAMR' 2) in _abritamr/main.nf_ , line 8, replace '--identity'...

bug
fixed

### Description of feature Hello, My experimental design is longitudinal (i.e. time series), and my main focus is finding DE genes in the interaction between treatment (yes/control) and time (T0....T6)....

enhancement

**Describe the bug** I am trying to go through the cluster step, needed to proceed to the detection part. After successfully running : tadrep -v -o /home/datasets/tadrep/ database --type plsdb...

bug