Marcel Schilling

@skurscheid: Have a look at https://github.com/OpenGene/fastp/issues/111. :wink:

@arq5x: Is this the recommendet way to get coverage tracks for paired-end spliced data? > `bedtools genomecov -ibam exampleYDR064W.bam -bga -pc -strand + > pc.bedgraph` > `bedtools genomecov -ibam exampleYDR064W.bam...

Thank you for the reply. I can login using the same device and phone number using the Fernschreiber app. So I doubt my account is banned. Also, I am not...

I never touched either an Android nor an iOS device. I'd rather stop using Telegram. Just wanted to rule out I am doing something wrong here. So I guess I'll...

@Pfaendner: Thank you for the contribution and apologies for the long silence. From reading #66 I understand you are fine with setting the Perl seed as suggested by @Drmirdeep instead...

@Pfaendner: That would be for @Drmirdeep to decide. AFAICT there was no interesting in this feature due to the additional maintenance burden. But you could definitely link your code here...

@Drmirdeep: Do I read this correctly when I understand this can be closed as 'wontfix'? :wink:

Thank you for providing more information. When sharing input data, please try to keep it to the *minumum* necessary to reproduce. Soif this can be triggered by a single BAM...

If you don't mind me asking, what are you trying learn from mapping 'a very large number of reads having the same sequence' to the genome? The standard miRDeep2 to...

Also, I was not able to reproduce the error your running the following commands: ```sh wget https://phenogen.org/downloads/example.bam samtools view -H example.bam > example.sam samtools view example.bam >> example.sam bwa_sam_converter.pl -c...