Marcel Schilling
Marcel Schilling
Cannot reproduce: ```sh snakemake --version ``` ``` 9.5.1 ``` ```sh cat Snakefile ``` ``` rule base: shell: "echo hello world" use rule base as rule1 with: output: touch("tmp1.tmp") priority: 1...
@ssvassiliev: Not sure if I understand your use case and issue properly but why don't you 'just' use `apptainer run snakemake` to run Snakemake in an environment that has Conda...
No worries. This is hardly a priority. :wink:
Like I said: No rush. This is more to make it easier for people new to pertpy that install via pip/conda and then try running the milo example.
LGTM but two test are failing. The first one looks like an unrelated network/upstream related issue. The second one concerns milo. Maybe an API change?
What's the point of marking feature requests as stale? Is a feature request less valid because nobody found time yet to work on it?
I will add the sign-off later today. If you auto-block PRs based on linting errors, it would be great to get notified by a comment. I only noticed the failing...
Is this some sort of cynical joke? Do you really expect me to invest even more time into this PR after it was completely ignored for two weeks straight? I...
scCODA can even be used to find credible effects using a single sample per condition
Have you tried pooling your replicates (i.e. use the condition as 'sample')? This obviously takes away all advantages of doing replicates but as you get more cells per 'sample' you...