TreeTools
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ms609
Create, modify and analyse phylogenetic trees in R
TNT can parse files with arbitrary line break positions; see dromaeodat.tnt in SI of https://doi.org/10.1016/j.cub.2020.06.105 Work started on branch parse-tnt. Unsolved problem: How to identify taxon names given that -...
With #92, `DropTip()` now returns edges numbered in preorder, but not conforming to the additional requirements of `Preorder()`. Is it true to consider this "cladewise"? Probably we need a function...
In `tree_numbering.R`, all functions should have a .numericMatrix method. Perhaps await answer to https://stackoverflow.com/questions/62001733 to implement in optimal fashion.
This is a major bottleneck on Preordering a tree with node labels. [Example file](https://github.com/user-attachments/files/16330353/1-all_genetrees.txt) ```r trees
Update `inst/_pkgdown.yml`: ```yaml bootstrap: 5 bslib: danger: "#A6081A" # Accessibility suggestion ``` Also add search to `right` of navbar, before `github` Add equivalent issue to other repos