Malte Petersen

Autocompletion on sequence names

1

It would be hugely helpful if there were a way to list all sequences in the reference genome, and use autocompletion on `goto` (or `:`) commands.

Version mismatch with pypi repos

1

When I use the preferred way to install isONclust via `pip install`, I am getting version 0.0.6, however the latest release on GitHub is 0.0.4 (as of 2020-03-04). Why is...

# Please fill those information if known: - sequana version: sequana=0.8.2=py37hf01694f_1 (installed with Conda) # Description of your problem with error message ``` $ sequanix WARNING [sequana.snaketools:119]: sequana pipelines not...

Automate COG table import

1

Add options to specify set name, description, and so on to orthograph-manager so that the table import can be automated. It should not need to be interactive.

Having a sequence class that has certain properties and methods would make writing different output modules easier.