Malte Petersen

icon indicating a website link https://ukbonn.de

icon company University Hospital of Bonn icon location Bonn, Germany icon location High-performance bioinformatician and currently IT infrastructure project lead at the University Hospital of Bonn.

Results 5 comments of Malte Petersen

Core Dumped while Generating Unitigs

> Your input FASTQ has duplicated entries. This shouldn't be a problem, nor should it make miniasm crash. If anything, mappings from duplicate reads should be ignored. Thanks for the...

Error: sqlite3 unable to open database file

Hi Camille! I'm having the same issue with v1.2, but on Linux. Same installation procedure.

--cog-list-file

Please make sure the IDs are actually present in your reference sets. Also make sure the COG list to be excluded is properly formatted (no Windows/Mac line breaks). Can you...

--cog-list-file

Please also post a sample of the COG table that you used to create the ortholog set. The identifiers have to match.

Under utilization of computational resources in cluster

Hi @CristianBezaBeza , please post the Orthograph config and the job script you use on your cluster. This will help me see what resources should actually be used by Orthograph....