Michael Dunne

Faster version of miscalibration_area, without approximation or using `shapely` package. Pending: - Unit tests - Incorporation of remaining args from old function - More descriptive variable names

Recommended args for masif-search are not correct

2

Should be `./compute_descriptors.sh -l lists/testing.txt`.

Hi there, I'm trying out mutations on a DeepSequence model trained on BLAST_ECOLX. What should be neutral mutations do not seem to give neutral results. For example: `data_helper.delta_elbo(ds_model,[], N_pred_iterations=500)` gives...

Bug in negative strands of exons

1

There's a bug in the gff to gtf converter: ``` Deha2F_6 JGI exon 544121 545199 . - . gene_id "DEHA2F06138g"; transcript_id "DEHA2F06138g"; Deha2F_6 JGI CDS 544121 545199 . - 2...