Michael Dunne

Even with this changed `compute_descriptors.sh` command does nothing: the items from the input list never get used (`eval_list`).

Hi Quan, Please see responses in >>green below! All the best, Michael From: danshu [mailto:[email protected]] Sent: 17 August 2017 03:00 To: mpdunne/orthofiller Cc: Subscribed Subject: [mpdunne/orthofiller] Several issues (#8) I...

[https://tr.cloudmagic.com/h/v6/emailtag/tag/2.0/1503044007/362f86978213108f86a5a8b78262f84e/3/c27e319654c1956ad6e4517247af6c32/6a6cf39013ed6ea33c0c7d9060753fda/3b71bdd096a4081c34819cd55715f1cf/newton.gif] What is he output if you type "man echo" and "man sed" into the command line? On Fri, Aug 18, 2017 at 5:03am, danshu wrote: Hi Michael， I'm using...

Hi Mike, Thanks for the input! The awk issue was a typo that should be fixed now. I don’t have access to a mac right now but I think that...

Hi Matteo, The logging problem might be to do with carriage return characters not getting written out properly by bash. To better see the output, try doing implementing sed -r...

Hi Matteo, This looks like an HMMER issue that we’re currently investigating: it can sometimes arise with particularly large genomes. May I ask what is the size of the below...

Hi Matteo, The new version OrthoFiller with individual chromosome searching is live on github, I was wondering if you’d had a chance to have a go with it? All the...

Hi Matteo, What was the input problem, and were you able to fix it? Thanks, Michael From: Matteo Schiavinato [mailto:[email protected]] Sent: 25 April 2017 15:59 To: mpdunne/orthofiller Cc: Subscribed Subject:...

Okay thanks, I’ll look into that! If it’s something I can get the script to check for at the beginning, that would save time waiting for a failure: it would...

Hi Matteo, I've looked into the issue with Ghost processes and this should be fixed in the next update. All the best, Michael