Matthew Parker

provide a GTF file for transcript to genome mapping

1

Hi @ploy-np, it would make xPore more widely useable if users were able to supply a valid GTF file to perform transcript to genome mapping instead of using pyensembl. It...

Adds 95% confidence intervals to read rate and poly(A) length estimates by performing bootstrapped resampling of kmer durations. By default this is switched off and the output should be identical...

simplify event ids for cross referencing in genome browser

3

Hi @EduEyras, I am trying out SUPPA for the first time and so far I am a big fan, particularly for the interpretability of the results. Something I find slightly...

Hi, I'm just wondering if pureCLIP supports multiple input BAM files? For example I have a dataset with an input control and a mock IP control. I can supply multiple...

Use information from conserved introns

2

Dear @lh3 , Thanks for developing miniprot. I have been trying it out & it is extremely useful. I had an idea for a possible enhancement... it would be very...