moshi
moshi
Hi, @GanizaniSitara > I'm really struggling to get labels oriented by 90 degrees. What you want to do is create a plot like the one below?  You can refer...
I think that error occurs when the `*.visual` file contains blank lines. I modified visualize.py to ignore the blank lines. Please try again with the modified code. If it still...
I could not reproduce the error in my environment (Ubuntu 20.04, Python 3.8.10). Since I cannot reproduce the error, it seems difficult for me to offer a solution. My apologies....
Ah, now I know what caused the error. You have the wrong file set for the third argument. Set `FastANI_test.out.visual` instead of `FastANI_test.out` as follows. ``` python _TOOLs/visualize.py _input/genome_1.fa _input/genome_2.fa...
Probably your input FASTA file is multi-record, right? Since visualize.py was created assuming a single record FASTA file (complete genome) as input, it was not able to correctly obtain total...
> The regions of the reference genome are plotted following the coordinates in the visual file (9th and 10th columns) ? Yes. The visual file has the conserved region coordinates...
From the clustering ANI matrix ([ANIclustermap_matrix.tsv](https://github.com/moshi4/ANIclustermap/blob/main/example/output/06_normal_dataset_annotation/ANIclustermap_matrix.tsv)) generated by [ANIclustermap](https://github.com/moshi4/ANIclustermap), it is possible to create a table like the one you show in your example. ## Example code Below is an...
Hi, @shlomobl > Is it possible to just plot the heatmap again, without running ANI from start? Yes. If you re-run the command by changing only the appearance options of...
Currently, pyGenomeViz does not have the functionality to align and visualize multiple chromosomes. I plan to add the functionality to visualize multiple chromosome alignment results in the future. I recommend...
@RyloByte and @gunjanpandey The following is an answer regarding the chromosome or contig inversion option. It may not be a complete answer, but it may be helpful. Genbank reverse complement...