moshi

Results 28 comments of moshi

Hi @SentientVirus, Thanks for your interest in pyGenomeViz. > Is there an easier way to plot several segments next to each other, or to skip a segment in the plot?...

I recently developed [pybarrnap](https://github.com/moshi4/pybarrnap), which reimplements the equivalent functionality of barrnap in python and updates the Rfam model profiles to the latest version. In pybarrnap, no overlap occurs between eukaryotic...

Hi, I developed [CafePlotter](https://github.com/moshi4/CafePlotter), a tool for plotting CAFE5 gene family expansion/contraction result. It is a simple visualization tool, but I think it can be used to quickly check the...

I think it would be a somewhat tedious task to make it possible to process similarity matrix result files in a generic way, as they differ slightly from software to...

Close as the issue is resolved in major upgrade v1.0.0

Close as the issue is resolved in major upgrade v1.0.0 **Code Example** ```python from pygenomeviz import GenomeViz from pygenomeviz.align import MUMmer from pygenomeviz.parser import Genbank from pygenomeviz.utils import load_example_genbank_dataset, ColorCycler...

Maybe it is because only `gene` features are targeted for visualization. Sometimes `gene` features are missing in Genbank format files. You may get a proper visualization figure by setting `CDS`...

pyGenomeViz is designed with clearly divided plot areas (matplotlib Axes) by FeatureTrack and LinkTrack, respectively. Therefore, it is probably difficult to implement your requested feature in pyGenomeViz.

Sorry, I am not going to spend the time and effort to support how to do this.

Hi @Edouard94, I'm not sure what visualization results you expect to get. Were you expecting the three rRNAs listed in the example GFF file to be plotted on one track...