TALON

TALON copied to clipboard

I get 'Annotation name 'ADV5_annot' not found in this database' in step talon_abundance

1

Hi, I follow the way to solving this problem in https://github.com/mortazavilab/TALON.wiki.git and when I use awk '($3 != "gene")' adv5_gtf.gtf and talon_reformat_gtf -gtf adv5_gtf.gtf. I got this error  Can...

thadasps

Annotation name not found

11

Hello fairliereese, I ran into the same issue in this closed thread (https://github.com/mortazavilab/TALON/issues/91), when trying to run either **talon_filter_transcripts** or **talon_abundance**. Neither my .db file, nor the output files from...

rkyger-git

Error when using non-human GTF

2

Hello, I'm trying to run TALON on PacBio data from a non-human primate (using [this](https://hgdownload.soe.ucsc.edu/hubs/GCF/012/559/485/GCF_012559485.2/genes/GCF_012559485.2_MFA1912RKSv2.ncbiRefSeq.gtf.gz) gtf file, parent directory [here](https://hgdownload.soe.ucsc.edu/hubs/GCF/012/559/485/GCF_012559485.2/genes/)). I'm able to initialize the database, label the reads, and...

ConnorBarnhill