Måns Magnusson

Create a proper test gemini database

1

We should have a gemini database with "synthetic" variants so we always know what to expect when writing tests

Search through all cases

8

We should think of a solution for how to do searches for all variants in all cases. When using the gemini- and mongo adapters this will be straightforward, we just...

You know what to do @robinandeer ...

This would create a way to narrow the analysis to custom regions

Add annotations

4

Creating this issue to gather similar issues in one. In general we need suggestions of how to pick these from the vcf, what are the common named keys, are they...

- [ ] https://flask-mongoengine.readthedocs.org/en/latest/

Checkout svviz

3

http://svviz.github.io/svviz/

One should be able to point to a chanjo database and get chanjo reports from the case/individual/variant view

These will not have any RefSeq defs. See https://github.com/Clinical-Genomics/scout/issues/644 - [ ] export MT exons/transcripts from Scout @moonso - [ ] update prod chanjo4 database - [ ] update pipeline...