Marco Pompili
Marco Pompili
Hi Sam, we are encountering the same problem here at the Zugaro lab. Many large amplitude spikes assigned to multiple clusters (especially for hippocampal recordings of pyramidal cells). Did you...
Hi Sam, we also wrote conversation scripts to keep using klusters and neuroscope. It looks like either us or you could have avoided it... We have this problem of simultaneous...
I know that one of the main features of kilosort is the detection of overlapping spikes but we are willing to drop them to solve this issue of big spikes...
Hi Peter We had to lower the threshold because with [5 10 10] and also [4 8 8] a lot of spikes were not extracted. With [3 6 6] we...
we are of course planning to share our functions including these cleaning functions but we are still testing them and given the results above we are still not completely happy...
To come back to the original issue, our current plan is to write a script to get rid of these. This because we are interested in cells that fires together...
Hi, we share Hiro's issues 2 and 3. 2. We do have a lot of doublets in our data. Most clusters in our hippocampal recordings share spikes, like you can...
Hi Marius, thanks for the feedback. We look forward for Kilosort2 then. Best, Marco.