Maria Kyriakidou

scNT-seq data not found

6

Hello Qiu, Thank you for all the information provided and the very detailed tutorials. I went through the zebrafish tutorial and now I would like to compare the estimated lineages...

Error while trying to clone the repository

2

Hello, while I was trying to clone your repository (using `git clone --recursive https://github.com/kcleal/dysgu.git`), I got the following error: `fatal: remote error: upload-pack: not our ref b341a74e355bcf4ff295307ed22d1f4905facb11` `fatal: Fetched in...

Hello, I would like to genotype variants detected with `Mutect2`. The variants were identified from targeted sequencing of high coverage (> 500x). Do you have any parameters to recommend for...

Hello! I recently installed `salsa` using `mamba` in the following environment: `# packages in environment at salsa2: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu...

Dimension issue while running "run_cytotalk"

1

Hello! I am trying to am trying to run CytoTalk to find out cell-cell interactions in my data that I obtained using `cellphonedb`. Hence, I have two matrices: one with...

I am wondering if the code that distinguishes the nuclear from the cytoplasmic RNA is available? Thank you!