scNT-seq data not found

[mkyriak]

Hello Qiu, Thank you for all the information provided and the very detailed tutorials. I went through the zebrafish tutorial and now I would like to compare the estimated lineages when having splicing data only and when having labeling data. Hence, I tried to follow the scNT-seq tutorial, however, I realized that the provided dropbox links for the labeling and the splicing information are not working. Could you please provide the links once again?

Thank you in advance! Maria

[Xiaojieqiu]

Could you please try dyn.sample_data.scNT_seq_neuron_splicing() and dyn.sample_data.scNT_seq_neuron_labeling.

Thanks, Xiaojie

[mkyriak]

Thank your for your rapid response, I have tried it and I am getting the following error: AttributeError: module 'dynamo.tl' has no attribute 'scNT_seq_neuron_splicing'

Thank you once again, Maria

[Xiaojieqiu]

sorry. I was mean to be sample_data instead of tl.

[mkyriak]

I tried using dyn.sample_data. to load the data. I can see all the datasets available, I am also able to load them (i.e. dyn.sample_data.hgForebrainGlutamatergic(), dyn.sample_data.pancreatic_endocrinogenesis(), dyn.sample_data.zebrafish()). However, when I am trying to load dyn.sample_data.scNT_seq(), I see that it is empty. Also, I tried both your suggestions; dyn.sample_data.scNT_seq_neuron_splicing() and dyn.sample_data.scNT_seq_neuron_labeling, and again it's giving me the following errors: >>> neuron_labeling = dyn.sample_data.scNT_seq_neuron_labeling() Traceback (most recent call last): File "<stdin>", line 1, in <module> AttributeError: module 'dynamo.sample_data' has no attribute 'scNT_seq_neuron_labeling' >>> neuron_splicing = dyn.sample_data.scNT_seq_neuron_labeling() Traceback (most recent call last): File "<stdin>", line 1, in <module> AttributeError: module 'dynamo.sample_data' has no attribute 'scNT_seq_neuron_labeling'

[enzeas]

dyn.sample_data.scNT_seq_neuron_labeling()

hi， I see the URL from the source code， scNT_seq‘s URL will auto redirect to the zebrafish data， is this normal？ scNT_seq_neuron_labeling：https://www.dropbox.com/s/5wk3q2xhgqai2xq/neuron_labeling.h5ad?dl=1 zebrafish：https://www.dropbox.com/s/5wk3q2xhgqai2xq/zebrafish.h5ad?dl=1

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