milyzhou

can you add method =" euclidean” of microtable$cal_betadiv?

1

Hi chi, I use trans_norm provides several data normalization. Then, I want to creat PCOA by use the "clr" microtable object. but it didn't work. I readed the microeco_tutorial. It...

how to select a group as reference per run MaAsLin2 diferential abundance analysis

1

Hi Chi, Thank you for your nice answer. I want to select a group as reference per to do MaAsLin2 diferential abundance analysis like this fig. I wonder microeco can...

How to extract the contribution of a variable to the principal component (percentage)

1

hi, Chi, I did the PCA， but I do not how to extract the contrib of variable ,such as pca_var$contrib in vegan package. t1

how to creat trans_alpha and trans_beta in genus level

2

Hi, LIU I created taxonomic table by HUMAnN3， I want to know that which level dose the trans_alpha and trans_beta use to analyze?and is it possible to restrct the analysis...