Miles Smith

icon indicating a website link http://www.omrf.org

icon company Oklahoma Medical Research Foundation icon location Oklahoma City, OK icon location Molecular biologist currently chained to a desk and mostly functioning as a code monkey. Working on precision medicine and big data with autoimmune disorders.

Results 2 issues of Miles Smith

FIX: replace `scanpy.neighbors._compute_connectivities_umap` with `sc…

…anpy.neighbors._connectivity.umap` Scanpy 1.10.0+ removes `scanpy.neighbors._compute_connectivites_umap`, but the required functionality is still provided by `scanpy.neighbors._connectivity.umap`, so this PR swaps those out.

Update plot.py

3 comment

Fixes `KeyError: [...] not in index` when running `celltypist.plot.dotplot()`