Miles Smith

icon indicating a website link http://www.omrf.org

icon company Oklahoma Medical Research Foundation icon location Oklahoma City, OK icon location Molecular biologist currently chained to a desk and mostly functioning as a code monkey. Working on precision medicine and big data with autoimmune disorders.

Results 3 comments of Miles Smith

BLAS/LAPACK routine 'DLASCL' gave error code -4

I too encountered the "BLAS/LAPACK routine 'DLASCL' gave error code -4" error while analyzing 10XGenomics data with Monocle. However, installing irlba commit 90c7b6d and reloading the Monocle library apparently fixed...

Error in source[["var"]][[mf]]$read() : attempt to apply non-function

For anybody still getting this error, I am pretty sure it is because one of the columns of `.var` in your original anndata object is a categorical. The h5 format...

Update plot.py

Sure. The problem is that if `prediction_order` is not passed to `celltypist.plot.dotplot()` (and thus to `celltypist.plot._get_fraction_prob_df()`), `prediction_order` is set to _all_ possible categories in the passed `AnnotationResult.predicted_labels`; however, the `dot_color_df`...