mageri

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How to modify header in order to use M4 option?

3

Hi mikessh: Thanks for sharing this great tool. I am trying to use mageri to call variants with the libraries containing UMIs. I have three fastq files generated from bcl2fastq....

rmtsoa

I have run quiagen pannel and I have problems on detec the umi. No variant are detected.Even if I use --non-umi no result obtained. I use the last release of...

bioinfo-dirty-jobs

Hi, I have a quick question about your workflow. As far as I understand this pipeline requires at least 5 reads with the same UMI to be included in the...

dfajar2

Variant calling error

4

Thank you for developing this useful tool! While running Mageri v1.1.1 on targeted DNA sequencing files using the M3 mode, I get the following error: [Wed Nov 22 16:11:50 PST...

davidcoffey

Error while running with UMI

6

Hey Mike, I am getting the following exception when running MAGERI: [Fri Aug 11 12:22:47 EDT 2017 +00m00s] [my_project] Started analysis. [Fri Aug 11 12:22:47 EDT 2017 +00m00s] [my_project] Pre-processing...

VNagesh-Bio

Allow Indel output

1

mikessh

Hi Mikessh, Thanks for you great tools. I was wondering how should I design the Master and Slave adapter to be compatible with illumina Exome Capture platform. Do you have...

apastore

Advanced UMI tag set handling

1

- Merging erroneous MIGs - Use real error rates x umi length, not those 1:20 ratios - Support for duplex sequencing > Check out https://cgatoxford.wordpress.com/2015/08/14/unique-molecular-identifiers-the-problem-the-solution-and-the-proof/

mikessh

Switch to new version of milib

1

mikessh