Michael McLaren

The error appears to be the same as discussed at https://github.com/pydata/pandas-datareader/issues/969. When I try installing with Python 3.12, I get ``` ~ ❯ python3 -m venv khmerEnv source khmerEnv/bin/activate (khmerEnv)...

Consider making stray website redirect to fido website

2

I just started using stray/fido after checking it out a few months ago, during which time the name change occurred, and (just for a minute) found it a little confusing...

Mixing up of $\Xi$ and $\Psi$ in priors vignette

3

The inverse Wishart is first defined with $\Xi$ as the scale matrix parameter, https://github.com/jsilve24/fido/blob/1b33c570e521a52fce2f242d6f78aae51a59c264/vignettes/picking_priors.Rmd#L96 but the subsequent line and equation calls it $\Psi$. Then, starting in the next section, $\Psi$...

Silva missing ranks incorrectly propagated into DADA2-formatted database by `dada2:::makeTaxonomyFasta_SilvaNR()`

22

A user pointed out to me in https://github.com/mikemc/dada2-reference-databases/issues/1#issue-826059569 problems with some of the taxonomy assignments from our Silva 138 database (https://zenodo.org/record/3986799) in which taxonomy names were sometimes showing up in...

The `dada()` verbose output typically ends with something like ``` selfConsist step 2> ``` where the ">" is the prompt. It seems to be happening because the last printed line...