Miguel Machado

Hi @jenniferlu717, I faced the same problem as reported by @kdbchau at #150. The .strip() at line 134 was removing all the white spaces, including the last tab for taxid...

Reported schema not found in scheme_species_map.tab

2

Hi, I'm running L. monocytogenes samples and noticed that the reported schema (listeria_2) is not found in scheme_species_map.tab. scheme_species_map.tab still has lmonocytogenes but db/pubmlst has listeria_2. I just wanted to...

Update Yersinia McNally scheme

3

Hi @tseemann, I updated the MLST DB with Enterobase Yersinia McNally scheme data downloaded yesterday. Because some times the Achtman scheme (ypseudotuberculosis) overrides McNally scheme and people might be interested...