BioGPT

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Installation Error

1

Following the install instruction and following error occurred. How can I resolve this? Thank you ``` $ python setup.py build_ext --inplace Traceback (most recent call last): File "/home/miniconda3/envs/biogpt/lib/python3.10/site-packages/torch/__init__.py", line 172,...

him1532

Is it possible to see the data/code used to actually pretrain the model? Thanks!

NtaylorOX

Cannot run inference on PubMedQA-Large

13

Using your pre-trained model, the infer_large.sh script is failing as follows: ``` KeyError: "'_name'" sed: can't read ../../checkpoints/QA-PubMedQA-BioGPT-Large/generate_checkpoint_avg.pt: No such file or directory infer_large.sh: line 31: ../../checkpoints/QA-PubMedQA-BioGPT-Large/generate_checkpoint_avg.pt: No such file...

VisionaryMind

Assertionerror

3

Hey @renqianluo , I was still facing the same issue. _Originally posted by @parthplc in https://github.com/microsoft/BioGPT/issues/10#issuecomment-1385790515_

parthplc

Added a requirements.txt file with the required modules for ease of installation.

AH-Merii

AH-Merii

Only the first checkpoint link works

1

Are the links for pretrained models beyond the first intentionally dead? Would love access to the Large Q&A version. Is there an ETA if 'coming soon'? Best

evolu8

infomation -> information

eltociear

-Fixed typos in checkpoints missing .tgz (eg. 'BioGPT-QA-PubMEDQA-BioGPT-Large.tgz')

1

-Checkpoint links were missing '.tgz' extensions

kurt-biorender

Dear authors, thank you for releasing your code and models, very impressive results! I was running BioGPT-Large and it looks like there is some missing code. Adding `transformer_lm_prompt_spt` which appears...

r-tinn