BioGPT issues

PubMedQA Prompt format.

13

It's unclear to me in the paper how the QA is being fed into the model. Not so much context and question, but the answer. In the data you have,...

badger-lord

BioGPT and NVIDIA Tesla K80

Hi to all, Does anyone know will BioGPT work with NVIDIA Tesla K80 or Tesla p40, I cannot find anywhere requrements? Thank you, Dorijan

dorijan

Question Answering task

I can see its text generation capability; wondering if it can give actual answers out of a context for a given question? As I see on PubmedQa dataset it was...

rajkumar-surana

How to get last layer embedding

I was trying to get last layer embedding that too of only one token[should i go with first token or I can pool]. How can I do that? I want...

rajkumar-surana

[BioGPT-Large-QA] run inference.sh error

1

I follow [BioGPT](https://github.com/microsoft/BioGPT)/[examples](https://github.com/microsoft/BioGPT/tree/main/examples)/[QA-PubMedQA](https://github.com/microsoft/BioGPT/tree/main/examples/QA-PubMedQA)/README.md to Test PubMedQA accuracy. This is my colab: https://colab.research.google.com/drive/1BQmO1c0s4E6ZqpB0Tfv7wocMhmJm2AKx?usp=sharing And I get the following result: ``` Begin inferencing /content/BioGPT/examples/QA-PubMedQA/../../data/PubMedQA/raw/pqal_qcl_ansis_test.tok.bpe.x using ../../checkpoints/QA-PubMedQA-BioGPT/checkpoint.pt 2023-04-10 10:39:21.923294: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow...

ZON-ZONG-MIN

Can we have train.sh file for the PubMedQA Model?

1

I saw that all other examples had a `train.sh` file, is there a reason its not shared for the PubMedQA model? Can we get the training file for this example?...

dhargopala

Deploy to GCP using Pulumi

2

calufa

Where does the relis-bin folder come from?

1

Hopefully, this is a simple question but I'm struggling and could use help. I could run the first example, but am stuck here: ``` import torch from src.transformer_lm_prompt import TransformerLanguageModelPrompt...

David-Degnan