BioGPT

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Hi, I'm trying to perform relation extraction on KD-DTI and I don't understand which replacement I should do: I created a drugbank account, what's next? thanks in advance!

lir0ni

Hi team, I'm using the pretrained model for DDI and trying to do relation extraction for the below abstract from Pubmed, I'm getting the output as same as the input...

MathewKevin

Token classification is not working

2

I have tried to run script of token classification and it showed an error that this script only works for fast tokenizer, I wanted to use biogpt for NER task,...

TekeshwarHirwani

How to run model and finetune it.

1

Hi Guys, I need to know how to load the BioGPT model and run it. BioGPT exactly matches with my requirement and i was in searching online but i could't...

nageshpindi

关系抽取DDI、DTI任务复现结果低于论文写的指标十多个点

2

 关系抽取DDI和DTI的复现指标分别为15.64和14.44，和论文结果相差较大。 而文本分类HoC和问答PubMedQA分别为85.31和78，和论文结果接近。 所有步骤都是按照readme上做的，而且关系抽取任务的错误是内容，格式正确，跑错代码的可能性低。请问这是怎么回事

Yun-Peng-Wang

Size Mismatch Error using GPT large

2

Hi, I am trying to use BioGPT large to finetune my dataset and I have replaced the --arch transformer_lm_prompt_biogpt_large in the train.sh file. But I am still getting the mismatch...

shashank140195

Could make Gradio join in?

1

It will easier to use

foce123

PubMedQA Finetuning

1

I'm trying to replicate the fine-tuning on PubMedQA and I'm getting different results compared to the published Model and the numbers reported in the paper. I fine-tuned the pertained model...

mahmouds-cerebras

Java code

1

Hello guy, new on this Platform 😀

tanishdewase

I'm checking the valid set and test set of HoC task, which is the data under 'BioGPT/data/HoC/raw' directory, and I find that they seem to be the same data. I...

Gio-2020