Michael Barton

Getting error 'ConnectionError: ('Connection aborted.', error(2, 'No such file or directory'))'

5

I am getting an error when trying to use dockerpty. Using the example in the README: ``` python import docker import dockerpty client = docker.Client() container = client.create_container( 'busybox:latest', stdin_open=True,...

How to feature test tools built on dockerpty?

5

I have been using dockerpty and find it very useful. Thank you for creating and releasing it - managing ttys seems very complicated and I absolutely sure I would have...

I'm following the lesson 1 notebook [Is it a bird? Creating a model from your own data](https://www.kaggle.com/code/jhoward/is-it-a-bird-creating-a-model-from-your-own-data) linked to in the resources page. I've copied this in kaggle and ran...

Categories to use for bioinformatics topics

9

What should be the choice of topics for 'the field of research?' Last year I used the categories from the Bioinformatics journal but this is rather limited. EDAM seems to...

How should the survey be collected?

2

Last time I used Google docs and worked fine. The output generated was a CSV with each row corresponding to an entry.

Add RnaseP and SRP genes

2

@tseemann, if possible I'd like to add some additional genes to barrnap. Would this be suitable? I've noticed that `bin/barrnap` appears to need the lengths of these genes, how should...

I tried running the first command on the readme but it doesn't seem to work. Do I need to configure anything else? ``` %% sumo create mybox Could not find...

Potential arm support?

3

Hi! Would you be interested in arm support in future? I gave it a shot today and and think the `-m64` CFLAG in the kmc patch precludes this. Thanks!