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Published 20 hours ago • verified publisher icon tseemann

Add RnaseP and SRP genes

Open michaelbarton opened this issue 7 years ago • 2 comments

@tseemann, if possible I'd like to add some additional genes to barrnap. Would this be suitable?

I've noticed that bin/barrnap appears to need the lengths of these genes, how should I go about adding these in? I'm not sure what identifier I should use in the dictionary.

michaelbarton avatar Nov 04 '16 23:11 michaelbarton

I've updated bin/barrnap with the expected sequence lengths for the RNAseP and SRP genes. This appears to be working now for Archea and Bacteria.

michaelbarton avatar Nov 23 '16 00:11 michaelbarton

The silva alignments in the build/build_HMM.sh files are no longer found at the URL given. In the process of my understanding of how this script works, I have refactored it into a Makefile to build the hmms, and a .json config file that lists all the HMMs included.

michaelbarton avatar Dec 14 '16 22:12 michaelbarton