Stijn van Dongen

Update: Very likely these four samples should have been run with different `-k`. This does not entirely negate the report I'd say, but of course I'll be running it with...

Hey, glad you're home with family. I've run SoC in a few different ways now. When I ran with the common variants file I got this: ``` ***** WARNING: File...

Hi, I ran this on 16 samples, and the results are still mostly unassigned. This is a summary plus small section of `clusters.tsv` for one of the samples: ``` 16...

My interest stems primarily from the stream processing angle, so I'm agnostic regarding supplementary/primary, but the proposal sounds sensible.

Hi Mike, thanks for the quick response and the suggestion to use `-m assembly`. I realised I missed out some bits; I'm using essentially the docker container `teichlab/tracer` with procps...

If this occurs in the shell version of apparix (supported in this repository) then I can assist. However, this shell version works for me in VSCode terminal, so I reckon...

What is the output of `apparix git` (both in IDE shell and ssh terminal)? Perhaps it has a different mount point depending on access manner.

Sorry, that should be `apparish git` (or `a git`)

Can you try `bind '"\t":menu-complete'` ; if I unset that I get the same (lack of) behaviour. Perhaps there is a difference in that setting between the two access ways.

Let me know if this is still an issue you'd like to pursue, otherwise I'll close it.