Stijn van Dongen

using ``` d2

I understand that. The issue I try to describe above is that the heatmap column ordering always seems to be derived from the (alphabetic ordering of) the dendrogram names; the...

There is still the issue that the heatmap is ordered by alphabetic ordering of the dendrogram names, I've not been able to avoid this. With this matrix: ``` x3 x2...

Yes, that matches my experiences. Hence, the only way, as far as I can see, to leave the matrix unchanged by ComplexHeatmap is to have the Newick identifiers alphabetically sorted...

Input to mcl should be non-negative similarities, the only solution to this is to change your input. If you have anti-correlations that you wish to take into account, then I...

Hello, we are experiencing a similar error (see below). In our case the input possorted_genome_bam.bam file is 151G, could this be indicative of a memory problem? We are now rerunning...

Hi Haynes, it is Chromium single cell 3 prime v3. I should have waited untill we had the backtrace really, but then this issue caught my eye. Will update!

Hello, I've attached the backtrace. It now offers the opportunity to run with `RUST_BACKTRACE=full`, let me know if that would help! Thanks, Stijn [backtrace.txt](https://github.com/wheaton5/souporcell/files/9038984/backtrace.txt)

The VCF file has lots of fields like this in the genotype field(s): ``` .:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:. ``` So this does chime with @RachellyN observations. In our case we...

Thanks Haynes for bearing with me. I completely get that this is not much to go on, I'll have a closer look and gather information and maybe also engage my...