Stijn van Dongen

Dear Haynes, thanks for your kind words -- let me say the only reason I used 'bearing with me' is that I feel my issue report is really lacking information...

Fantastic, thank you very much, will run it this evening or tomorrow.

Hello, I get this error when running it: ``` Traceback (most recent call last): File "/opt/souporcell/renamer.py", line 61, in fastq.write(read.seq+"\n") TypeError: unsupported operand type(s) for +: 'NoneType' and 'str' Traceback...

Mmmm. I did delete the `END8738154/soc` directory. There is a small chance I did it for the wrong sample, I'll do it again.

I've done it again with the same result. Also did `samtools view possorted_genome_bam.bam | tail -n 200 > ttt` which looks fine (silly test). I'm checked my genome file before,...

(Sent it via mail)

Sorry, now sent to your actual e-mail address.

Thanks a lot Haynes for checking this so quickly. And as I type this I see the 2 line fix coming in. Fab. We have 16 samples we are going...

Got it, now running. Edit - as it was running happily I have now submitted all 16 samples. I'm off for three days, but will try to update this later...

Out of 16 jobs 11 succeeded, one is still running, and four failed. I've attached the concatenated error logs for those four; there seem to be three different types of...