Marc Horlacher

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icon company Helmholtz Center Munich icon location Bioinformatics PhD Student @ TUM and ICB (Helmholtz Center). Broad interest in statistics, machine-and deep-learning, software development and biology.

Results 8 issues of Marc Horlacher

Jellyfish File Specifications

I'm trying to find details on how exactly counts are stored in the *.jf file, but so far have been unable to find any. Any direction are welcome. Thanks

Slice splits support for datasets.load_from_disk

### Feature request Support for slice splits in `datasets.load_from_disk`, similar to how it's already supported for `datasets.load_dataset`. ### Motivation Slice splits are convienient in a numer of cases - adding...

enhancement

fixed issue where the oasis CLI example displayed incorrect database path

1 comment

OASis CLI displays an Incorrect example database path

It's a minor thing, but it gave me a headache for a little while and I needed to dig through the code to see how the path specified via `--oasis-db`...

Is there another actively maintained library with similar functionality to rangy?

1 comment

Mixup in hyperparameters for H_pert H_gene?

In "Supplementary Note 22: Hyperparameter Search" there's the following part: "[...] the number of top similar genes in the co-expression network H_pert – {3, 5, 10, 20}; the number of...

Pre-trained model for sciplex data?

Encountering "Error while fetching server API version: Not supported URL scheme http+docker"

4 comment

I'm using version 7.2.0 - I imagine this is related to this issue https://github.com/docker/docker-py/issues/3256? Machine is running ubuntu-22.04. Full traceback pasted below. ``` vagrant@node-1:/services$ docker-compose up Traceback (most recent call...