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OASis CLI displays an Incorrect example database path
It's a minor thing, but it gave me a headache for a little while and I needed to dig through the code to see how the path specified via --oasis-db
is passed to SQLite.
The CLI --help
page suggests to pass paths as sqlite:////Absolute/path/to/oas_human_subject_9mers_2019_11.db
, but as can be seen below, the sqlite:///
is already prepended. This results in Error: .. The OASis DB path does not exist ...
.
https://github.com/Merck/BioPhi/blob/55440a0b6d561375f26d283c7425042ccd084288/biophi/humanization/methods/humanness.py#L297