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OASis CLI displays an Incorrect example database path

Open mhorlacher opened this issue 6 months ago • 0 comments

It's a minor thing, but it gave me a headache for a little while and I needed to dig through the code to see how the path specified via --oasis-db is passed to SQLite.

The CLI --help page suggests to pass paths as sqlite:////Absolute/path/to/oas_human_subject_9mers_2019_11.db, but as can be seen below, the sqlite:/// is already prepended. This results in Error: .. The OASis DB path does not exist ....

https://github.com/Merck/BioPhi/blob/55440a0b6d561375f26d283c7425042ccd084288/biophi/humanization/methods/humanness.py#L297

mhorlacher avatar Jan 03 '24 12:01 mhorlacher