Mathias Goncalves
Mathias Goncalves
- Adds support for `weeks` and `years` age units while parsing, and converts to `months`, which is used internally. - Alters the age parsing heuristic to prefer parsing `subject[/session]/scans.tsv`, which...
### What happened? When running the SyN portion of the pipeline: ``` nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node fmap_select_std. Traceback: Traceback (most recent call last): File "/opt/conda/envs/nibabies/lib/python3.11/site-packages/nipype/interfaces/base/core.py", line 400, in...
### What happened? Popped up in the CI. https://circleci.com/api/v1.1/project/github/nipreps/nibabies/2851/output/112/0?file=true&allocation-id=66d385c23adb526541491dea-0-build%2FABCDEFGH Specifically, a crash occurs: ``` 240831-21:10:41,685 nipype.workflow WARNING: [Node] Error on "nibabies_24_1_wf.fsdir_run_20240831_211035_585ba987_6362_4fdc_adf4_96fbcefd71f4" (/scratch/nibabies_24_1_wf/fsdir_run_20240831_211035_585ba987_6362_4fdc_adf4_96fbcefd71f4) 240831-21:10:41,686 nipype.workflow ERROR: Node fsdir_run_20240831_211035_585ba987_6362_4fdc_adf4_96fbcefd71f4 failed to run...
It seems if I pass in an array with any nan values, the pvals_corrected is filled with only nans. The functions I've used: `statsmodels.sandbox.stats.multicomp.multipletests(p,alpha=0.05,method='fdr_bh')` `statsmodels.sandbox.stats.multicomp.fdrcorrection0(p,alpha=0.05)` --- the following is based...
> posted by @effigies in nipreps/fmriprep#3387 While attempting to reproduce a bug report, I ran across a crash. Fieldmaps are always in RAS, while the BOLD references and masks are...
### What would you like to see added in this software? ATM, if q/s forms significantly differ between `in_file` and `reference`, only a warning will be raised - having an...
Preparing for a new release, slated for Monday May 19 @joey-scanga would you like to be added to the project [contributors](https://github.com/nipreps/nibabies/blob/master/.maint/contributors.json)? If so, can you open a PR adding your...
Closes #458 This was partially addressed in https://github.com/nipreps/nibabies/pull/443, but this implementation generalizes across surface reconstruction methods.
Adds logic to restructure workflow output to be more easily consumed by the HBCD data management system. This new command line option, `nibabies-hbcd`, restructure FreeSurfer and mcribs output directories to...
### A short summary of what you would like to see in *NiBabies*. Post #418 - the anatomical -> template registration attempts to use the same modality if available. We...