Mervin Fansler

Bioconductor Release 3.15

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Are there any plans to bulk build the latest Bioconductor release?

I wanted to let you know that I created [a Conda recipe for this package on Conda Forge](https://github.com/conda-forge/r-openair-feedstock). This allows those managing their R environments with Conda to use the...

Provide optional strand-specificity flags for `kallisto bus`

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### Purpose This pull request extends `kallisto bus` to have optional functionality to associate reads to ECs based on transcript strand. This is largely achieved with the code already existing...

feature request: Verify solvability on all builds

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There are likely more of these, but I found [a case](https://stackoverflow.com/q/69754812/570918) where `osx-arm64` builds exist but can never be installed due to lack of dependencies: ```bash CONDA_SUBDIR=osx-arm64 mamba create -n...

Thanks for the neat package! I just wanted to let you know the package has been added to Conda Forge ([`r-metbrewer-feedstock`](https://github.com/conda-forge/r-metbrewer-feedstock)), so those who manage R environments with Conda can...

use of `base::mtfrm` entails R 4.2 or later

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The latest CRAN release (v0.11.2) fails to install for R 4.1 due to [reference to `base::mtfrm`](https://github.com/cran/expss/blob/63eec59fe1816e82a5beb2a9662b905be7bee85d/R/S3_methods.R#L5), which seems was added in 4.2. For reference, this is how it fails on...

This package frequently bumps patch-level versions in dependencies. Is this actually necessary? For instance, [`dplyr` v1.1.2 -> v1.1.3](https://github.com/tidyverse/dplyr/releases/tag/v1.1.3) doesn't appear to add any functionality. What is the reason that this...

Windows build LINK failures: cannot open input file 'm.lib'

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**Describe the issue or bug** All Conda Forge builds of `rpy2` v3.5.15 are failing on Windows (see https://github.com/conda-forge/rpy2-feedstock/pull/123). The root cause appears to be use of MSVC 14.3 in combination...

Error from `min_version` should be prioritized

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**Is your feature request related to a problem? Please describe.** Ideally, the `snakemake.utils.min_version` function checks for a minimum version and raises a `WorkflowError` when that is not satisfied. However, in...

Override Channels with `conda env create`

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`conda env create` could benefit from an `--override-channels` flag similar to the `conda (create|install|update)` commands. This would help YAMLs more reliably reproduce an environment as specified. Otherwise, users must manipulate...