Mervin Fansler

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icon company BRIC, University of Copenhagen icon location Københavns Universitet icon location R Team @conda-forge. Postdoc in Cvejic Lab, BRIC, UCPH. PhD from @Mayrlab MSKCC. scUTRquant creator. Reproducible research enthusiast.

Results 104 comments of Mervin Fansler

Azure CI jobs sometimes fail with "fatal: couldn't find remote ref"

@danielnachun and I were also seeing this since at least Friday.

BUG: <insert-descriptive-title>object ‘is_ggplot’ is not exported by 'namespace:ggplot2'

This was [introduced in ggplot2 v3.5.2](https://github.com/cran/ggplot2/compare/3.5.1...3.5.2#diff-b6b6854a02ae177f8860f49654ff250c1554d021ae434b6efdbe99d00bdc6055R464). Not sure which package is triggering it here, but for me it was **GGally**. In my case, it was a matter of restarting R...

Bottleneck with chrM

Another thought here: when running with genotypes or common VCF mode, the chromosomes are known in advance. For example, recommended common variants only include chr1-22,X. One could make the `get_bam_regions`...

CRAN skeleton fails to detect compilation in `rBeta2009` (`r-rbeta2009`)

This still exists and is reproducible, but the original package used as an example has subsequently release a version (v1.0.1) with a corrected DESCRIPTION file that now includes a `NeedsCompilation:...